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Glycomaterials Chronicles

Explore curated research chronicles, originating experimental data, spectral analysis, and related open-access publications across carbohydrate materials research.

Open Access publications hosted on VTechWorks
In-House Research
<p>Toward Automatic Inference of Glycan Linkages Using MSn and Machine Learning - Proof of Concept Using Sialic Acid Linkages</p>

Toward Automatic Inference of Glycan Linkages Using MSn and Machine Learning - Proof of Concept Using Sialic Acid Linkages

Xinyi Ni, Nathan B. Murray, Stephanie Archer-Hartmann, Lauren E. Pepi, Richard F...

  1. Brandeis University
  2. University of Georgia, Athens
  3. Virginia Tech
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In-House Research
Open Access
<p>Coarse-grained molecular dynamics integrated with convolutional neural network for comparing shapes of temperature sensitive bottlebrushes</p>

Coarse-grained molecular dynamics integrated with convolutional neural network for comparing shapes of temperature sensitive bottlebrushes

SY Joshi, S Singh, SA Deshmukh

Department of Chemical Engineering, Virginia Tech, Blacksburg, VA, 24061, USA

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In-House Research
<p>FurC (PerR) contributes to the regulation of peptidoglycan remodeling and intercellular molecular transfer in the cyanobacterium Anabaena sp. strain PCC 7120</p>

FurC (PerR) contributes to the regulation of peptidoglycan remodeling and intercellular molecular transfer in the cyanobacterium Anabaena sp. strain PCC 7120

Cristina Sarasa-Buisan,1,2 Mercedes Nieves-Morión,2 Sergio Arévalo,2 Richard F. ...

1 Departamento de Bioquímica y Biología Molecular y Celular, Facultad de Ciencia...

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In-House Research
<p>Protein&minus;Ligand CH&minus;&pi; Interactions: Structural Informatics, Energy Function Development, and Docking Implementation</p>

Protein−Ligand CH−π Interactions: Structural Informatics, Energy Function Development, and Docking Implementation

Yao Xiao, Robert J. Woods

The Complex Carbohydrate Research Center, University of Georgia

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In-House Research
<p>Predicting the stereoselectivity of chemical reactions by composite machine learning method</p>

Predicting the stereoselectivity of chemical reactions by composite machine learning method

Jihoon Chung1, Justin Li2, Amirul Islam Saimon3, Pengyu Hong4, & Zhenyu Kong3

1Department of Industrial Engineering, Pusan National University, Busan, Korea.

...
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In-House Research
<p>Synthesis and Characterization of Multi-Reducing-End Polysaccharides</p>

Synthesis and Characterization of Multi-Reducing-End Polysaccharides

Zhenghao Zhai‡1, Yang Zhou‡2, Andrew G. Korovich1,3, Brady A. Hall4, Hu Young Yo...

  1. Macromolecules Innovation Institute, Virginia Tech, Blacksburg, VA 24061, Uni...
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In-House Research
<p>Imbalanced spectral data analysis using data augmentation based on the generative adversarial network</p>

Imbalanced spectral data analysis using data augmentation based on the generative adversarial network

Jihoon Chung1, Junru Zhang2, Amirul Islam Saimon2, Yang Liu2, Blake N. Johnson2*...

1Department of Industrial Engineering, Pusan National University, Busan, South K...

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In-House Research
<p id="screen-reader-main-title">Aggregation of functional groups leads to unexpected lowering of PNIPAM LCST</p>

Aggregation of functional groups leads to unexpected lowering of PNIPAM LCST

Soumil Y. Joshi and Sanket A. Deshmukh

Department of Chemical Engineering, Virginia Tech, Blacksburg, VA 24061, USA

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In-House Research
<p>Development, Validation, and Applications of Nonbonded Interaction Parameters between Coarse-Grained Amino Acid and Water Models</p>

Development, Validation, and Applications of Nonbonded Interaction Parameters between Coarse-Grained Amino Acid and Water Models

Esmat Mohammadi, Soumil Y. Joshi, Sanket A. Deshmukh

Department of Chemical Engineering, Virginia Tech, Blacksburg, Virginia 24061, U...

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In-House Research
<p>All-polysaccharide, self-healing, pH-sensitive, in situ-forming hydrogel of carboxymethyl chitosan and aldehyde-functionalized hydroxyethyl cellulose</p>

All-polysaccharide, self-healing, pH-sensitive, in situ-forming hydrogel of carboxymethyl chitosan and aldehyde-functionalized hydroxyethyl cellulose

Rafael F.N. Quadrado a, Zhenghao Zhai b, Matheus Zavadinack c, Giseli Klassen d,...

a Laboratório de Tecnologia e Desenvolvimento de Compósitos e Materiais Poliméri...

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In-House Research
<p>Polyproline peptide targets Klebsiella pneumoniae polysaccharides to collapse biofilms</p>

Polyproline peptide targets Klebsiella pneumoniae polysaccharides to collapse biofilms

Laura De los Santos 1, Robert L. Beckman IV 1, Christina DeBarro 1, James E. Kee...

1 Division of Immunity and Pathogenesis, Burnett School of Biomedical Sciences, ...

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In-House Research
<p>Lectin Fingerprinting Distinguishes Antibody Neutralization in SARS-CoV‑2</p>

Lectin Fingerprinting Distinguishes Antibody Neutralization in SARS-CoV‑2

Wuo, Michael G.; Dugan, Amanda E.; Halim, Melanie; Hauser, Blake M.; Feldman, Ja...

Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massa...

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In-House Research
<p>Insights into the electronic and structural properties of cellulose and amylose: A comparative force field study</p>

Insights into the electronic and structural properties of cellulose and amylose: A comparative force field study

Esmat Mohammadi1, Justin Lemkul2

1-Department of Chemical Engineering, Virginia Tech, Blacksburg, VA  24061  

2-...

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In-House Research
<p>Tuning Polyacrylate Composition to Recognize and Modulate Fluorescent Proteins</p>

Tuning Polyacrylate Composition to Recognize and Modulate Fluorescent Proteins

Darwin C. Gomez, Swarnadeep Seth, Ronnie Mondal, Stephen J. Koehler, Jared G. Ba...

D. C. Gomez, R. Mondal, S. J. Koehler, J. G. Baker, I. C. Anderson, M. R. Smith,...

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In-House Research
<p>TREM2 on microglia cell surface binds to and forms functional binary complexes with heparan sulfate modified with 6-O-sulfation and iduronic acid</p>

TREM2 on microglia cell surface binds to and forms functional binary complexes with heparan sulfate modified with 6-O-sulfation and iduronic acid

Ilayda Ozsan McMillan, Li Liang, Guowei Su, Xuehong Song, Kelly Drago, Hua Yang,...

Division of Chemical Biology and Medicinal Chemistry, University of North Caroli...

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In-House Research
<p>Evidence of bidirectional transmembrane signaling by the sensor histidine kinase GacS from Pseudomonas aeruginosa</p>

Evidence of bidirectional transmembrane signaling by the sensor histidine kinase GacS from Pseudomonas aeruginosa

Safoura Salar, Steve Silletti, Florian D. Schubot

Department of Chemistry and Biochemistry, University of California, San Diego, C...

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In-House Research
<p>Anti-lung cancer activities of polysaccharides from Laminaria japonica: Network pharmacology and structural insights</p>

Anti-lung cancer activities of polysaccharides from Laminaria japonica: Network pharmacology and structural insights

Weihua Jin, Chenghui Lu, Lin Sun, Jing Hou, Zhongshan Zhang, Sanying Wang, Fumin...

Department of Chemical and Biological Engineering, Center for Biotechnology and ...

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In-House Research
<p>Glycoproteomic characterization of Neuropilin-1 reveals critical glycosylation sites for SARS-CoV-2 entry</p>

Glycoproteomic characterization of Neuropilin-1 reveals critical glycosylation sites for SARS-CoV-2 entry

Tuhin Das, Shuhong Luo, Panning Wang, Jianmin Fang, Asif Shajahan, Lauren Peppi,...

RayBiotech Guangzhou Co. Ltd. Guangzhou, Guangzhou 510000, China; RayBiotech Inc...

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In-House Research
<p>Scalable Accelerated Materials Discovery of Sustainable Polysaccharide-Based Hydrogels by Autonomous Experimentation and Collaborative Learning</p>

Scalable Accelerated Materials Discovery of Sustainable Polysaccharide-Based Hydrogels by Autonomous Experimentation and Collaborative Learning

Yang Liu, Xubo Yue, Junru Zhang, Zhenghao Zhai, Ali Moammeri, Kevin J. Edgar, Al...

Department of Mechanical and Industrial Engineering, Northeastern University, Bo...

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In-House Research
<p>Binding free energy analysis of galectin‐3 natural ligands and synthetic inhibitors</p>

Binding free energy analysis of galectin‐3 natural ligands and synthetic inhibitors

Luke Newman, Valerie Vaissier Welborn

Macromolecules Innovation Institute, Virginia Tech, Blacksburg, Virginia, USA; D...

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