Machine Learning Tools and Scripts

Script Name Script Description Download Related Project
CNN_Loop.py The script converts 3D coordinates for bottlebrush polymer structures into binary voxels and utilizes a convolutional neural network architecture to perform classification of these structures into their respective shapes. We also utilize the generated feature vectors for different structures to quantify the similarities between these BBP shapes. Training data is available in Project GLDP000007, named "BBP shapes CNN training data" Login to download GLDP000007
GlycoDeNovo GlycoDeNovo -- an Efficient Algorithm for Accurate de novo Glycan Topology Reconstruction from Tandem Mass Spectras. More information at https://www.cs.brandeis.edu/~hong/Research/GlycoDeNovo/GlycoDeNovo.htm Login to download GLDP000004